Course description

Biopython is a collection of open-source tools and libraries for computational biology and bioinformatics. It provides functionality for working with biological data, including sequence analysis, file parsing, and database querying. Biopython supports multiple bioinformatics formats, such as FASTA, GenBank, and others. It also includes tools for alignment, 3D structure analysis, and phylogenetic tree construction. Biopython is widely used by researchers and developers to streamline data analysis and solve complex problems in biological research.

What will i learn?

• demonstrate proficiency in parsing and manipulating biological sequences using Biopython, including the ability to perform basic sequence operations, work with different file formats, and connect with biological databases. (L2)
• master advanced multiple sequence alignment techniques in Biopython, showcasing their ability to create, manipulate, and analyze complex sequence alignments. They will proficiently apply popular alignment tools such as ClustalW and MUSCLE to align diverse biological sequences. (L4)
• exhibit expertise in designing and executing sophisticated bioinformatics workflows using Biopython. They will demonstrate mastery in tasks such as sequence search (BLAST), database querying (Entrez), and advanced phylogenetic analysis, showcasing proficiency in handling large datasets and utilizing external applications like PAML. (L6)